PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g11800.3.p
Common NameBRADI_1g11800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 254aa    MW: 27653.8 Da    PI: 9.9753
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g11800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.5e-32159215158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RRq+Rak+e e+k  +k+rkpylheSRh+hA+rR+Rg+gGrF
  Bradi1g11800.3.p 159 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKARKPYLHESRHQHAMRRARGTGGRF 215
                       69***************************9.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-36157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.039158218IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27160215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-25161183IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860163183IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.5E-25192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSGMGSRPEG TNLVEPRGQG ALPSGMAMQP WWTGSGLGAV SPAVVAPGSG IGMSLSSNPV  60
GDGATKGKTS DDARADSSED SQRSGEPKDR SFGEEKHHAT SRMPALASDY LAPYSQLELN  120
QPIASATYPY PDAYYTGMTH FQLPGLTQSR MPLPLEISEE PVYVNAKQYH GILRRRQSRA  180
KAELERKAIK ARKPYLHESR HQHAMRRARG TGGRFLNTKK NENGASKERA EPNKGDQNSE  240
YHRVPPDLQL RQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20159223266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560983.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_010231280.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_014752975.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_014752976.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLI1GPC40.0I1GPC4_BRADI; Uncharacterized protein
STRINGBRADI1G11800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.13e-41nuclear factor Y, subunit A4